Mapujete pole id nesprávně ve fázi projektu i skupiny.
Mělo by to být _id ne id. Změňte také typ e-mailu na Řetězec. Funguje pro mě.
GroupOperation groupOp = Aggregation
.group("firstName", "lastName", "email", "status", "_id")
.addToSet("department").as("department").addToSet("address").as("address");
ProjectionOperation projectStage = Aggregation.project("firstName", "lastName", "email", "status", "department", "address", "_id");
...
AggregationResults<EmployeeOutFacet> EmployeeOutList = mongoTemplate.aggregate(aggregation, mongoTemplate.getCollectionName(Employee.class), EmployeeOutFacet.class);